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Gene Regulation and Protein Synthesis

Every cell in your body has a full set of genes, or ‘recipes,’ to build many different kinds of proteins (including enzymes). What causes a gene to go from its normal ‘turned off’ state (when it IS NOT building proteins) to its ‘turned on’ state (when it IS building proteins)?  To answer this question, we will zoom in and take a closer look at a gene and its environment to see how and why a specific protein is made.  

Project GUTS MOOC

Project GUTS presented the CS in Science curriculum modules in a Massive Open Online Course (MOOC). The links below will allow you access to the original MOOC site, to see not only the written curriculum but also screencasts of building the related StarLogo Nova models and other background information for teachers and facilitators. The MOOC was also translated in Spanish (see link below).

For the 2017 course, please go to guts-2017.appspot.com

Swords and Shields

Swords and Shields is an interactive simulation game which teaches students some of the basic ideas of complex adaptive systems. After playing, you can show the students a model of the game in StarLogo TNG or StarLogo Nova to discuss basic concepts of agent-based modeling. Try it, it's fun! See also the variation to this activity in Resources, and see the related activity of TryAngles.

What are the chances?

This activity to explore randomness and how to program percent chance in StarLogo Nova.

Random Walks with code blocks for StarLogo Nova

Modeling the movement of agents (people,molecules, cars or ideas) is an important part of modeling systems. Different agents will have varying amount of randomness in their “walks” which can have an impact on systems. In this activity, students will apply the concept of randomness to a simple StarLogo program in which the agents will use ‘random’ blocks to ‘wiggle’ as they move around SpaceLand. This programming activity follows the ‘What are the Chances?" activity.

Rock Paper Scissors

The classic game of Rock Paper Scissors is known to all students. This common experience can then be used to encourage students to think about Complex Adaptive Systems in terms of unpredictability, which comes from the simple rules of agents. The off-line activity gives students a set of rules that will then be programmed into their computer model using Boolean logic and collisions.

Battleship activity in StarLogo Nova

This activity uses the idea of the classic "battleship" game to review x and y coordinates in StarLogo Nova.  Students do a pen and paper simulation of the game, and then use a base model in StarLogo Nova to review the coordinates.

Decoding a model

Decoding a model is an on computer activity in which students are challenged to decode a model.

Archived Material: CS in Science Module 1 (for StarLogo Nova 1.0)

Archived Material: Module 1 introduces basic concepts in modeling complex systems through hands-on activities and participatory simulations. A scaffolded series of highly-engaging design and build activities guide students through developing their first computer model in StarLogo Nova 1.0, a modeling and simulation environment developed at the Massachusetts Institute of Technology.

Battle of the Agents

A take on the classic board game Battleship, this paper and pencil activity is a fun way to help students understand the use of x and y coordinates in StarLogo Nova. After the activity, students can use the StarLogo Nova model to experiment with x and y locations in a game-like context.

Enzymes: Chew on This!

Carbohydrates in food are an important source of energy for the body. When you eat starch, it must be broken down into simple sugars before your body can use it for energy. In this Biograph Virtual Lab you will use a simulation to explore the breaking down of starch into sugar. The simulation will enable you to compare and contrast the conversion of starch to sugar both with and without enzymes. This will help you understand the role of enzymes in digestion.

El Juego de la pesca (La Tragedia de los Comunes)

El Juego de la Pesca utiliza el concepto de Tragedia de los Comunes (Hardin, 1968) para trabajar sobre sustentabilidad. El jugador (pescador) tiene 10 días para atrapar tantos peces como pueda para alimentar a su familia. Cada día, el pescador puede elegir pescar uno, dos o tres peces, o no pescar ninguno. Hay otros dos pescadores que también tratan de capturar tantos peces como puedan. El lago en el que se pesca sólo puede soportar 20 peces (que es la capacidad de carga del lago).

Dengue outbreak simulation

This model simulates the transmission of the dengue virus in a neighborhood of four blocks during 180 (one hundred and eighty) days. The vector of the virus is the mosquito Aedes egyptii. The simulation shows a chart of the evolution of the outbreak (the change in the number of healthy people and infected people), another graph with the evolution of the mosquito population and some monitors that indicate the state of the mosquito population and how many people were infected.

Simulación de un brote de Dengue

Este modelo simula la transmisión del virus del dengue en un barrio de cuatro manzanas durante 180 días. El vector del virus es el mosquito Aedes egyptii. La simulación muestra un gráfico con la evolución del brote (el cambio en la cantidad de personas sanas y de personas infectadas), otro gráfico con la evolución de la población de mosquitos y unos monitores que indican el estado de la población de mosquitos y cuántas personas fueron infectadas.

What are the chances?

An off-line activity to introduce students to concepts of randomness and how to program percent chance using a slider in StarLogo Nova.

Segregation Model

This model shows how a small preference for looking like one's neighbors can lead to a segregated society. The unit so far includes the model as a mystery model to be discussed and decoded by students, a partial piece of code with to use for decoding practice, a finished model, some background information, and a link to an on-line resource demonstrating these concepts. We are developing an off-line activity and other curriculum for this module -- stay tuned!

Daisy world

A model demonstrating the albedo effect of black or white surfaces. Use as a part of the Climate Change and Agriculture Project GUTS Curricular Unit, or as a stand-alone model, activity, and video.

Pond Ecosystem Biograph project

Ecosystems are made up of interacting, interdependent parts, which are always interacting with and changing each other. Healthy ecosystems are long-lasting. In a long-lasting ecosystem the number of plants and animals may increase and decrease over time, but there are always enough individuals to reproduce and establish the next generation. In this Biograph Virtual Lab your challenge is to build a model of a long-lasting, healthy pond ecosystem using Toolblox programming blocks.

Evolution Curriculum from BioGraph

Evolution is a change in genetic information in a population that is observed over many generations, due to the random chance survival and reproduction of particular individuals. In this BioGraph Virtual Lab, you will observe how a population of fish in a pond changes over time. By the end of this activity, you will understand how random factors (genetic drift) and non-random factors (natural selection) contribute to evolution.

Lightbot and StarLogo NOVA

This on-line activity asks students to complete the first 8 exercises of the popular "Lightbot" program within the Hour of Code activities. Then, students try to recreate a similar program in StarLogo Nova, where an unfamiliar user could use keyboard controls, widgets, or procedures to get the robot to follow a pattern. It practices several computing skills (procedures, loops) and conveys the idea that games students see and play on-line have been created and coded by someone.